California NanoSystems Institute at UCLA Publications

A list of the published scientific articles which include work done in the ALMS/MSI Facilities. Note: Some parts of the Facilities have been in operation since 1997.

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Publications 2018

Bentolila NY, Barnhill RL, Lugassy C, Bentolila LA. Intravital Imaging of Human Melanoma Cells in the Mouse Ear Skin by Two-Photon Excitation Microscopy Methods.  Mol Biol. 2018;1755:223-232. doi: 10.1007/978-1-4939-7724-6_15. PMID: 29671273

Bielas J, Herbst A, Widjaja K, Hui J, Aiken JM, McKenzie D, Miller RA, Brooks SV, Wanagat J. Long term rapamycin treatment improves mitochondrial DNA quality in aging mice. Exp Gerontol. 2018 Feb 24. doi: 10.1016/j.exger.2018.02.021.

Diaz-Perez S, Kurmis AA, Yang F, Kummer NT, Dervan PB, Nickols NG. Interference with DNA repair after ionizing radiation by a pyrrole-imidazole polyamide. PLoS One. 2018 May 1;13(5):e0196803. doi: 10.1371/journal.pone.0196803. eCollection 2018.

Fornabaio G, Barnhill RL, Lugassy C, Bentolila LA, Cassoux N, Roman-Roman S, Alsafadi S, Del Bene F. Angiotropism and extravascular migratory metastasis in cutaneous and uveal melanoma progression in a zebrafish model. Sci Rep. 2018 Jul 11. doi: 10.1038/s41598-018-28515-6.

Jiang W, Ting K, Lee S, Zara JN, Song R, Li C, Chen E, Zhang X, Zhao Z, Soo C, Zheng Z. Fibromodulin reduces scar size and increases scar tensile strength in normal and excessive?mechanical?loading porcine cutaneous wounds. J Cell Mol Med. 2018 Apr;22(4):2510-2513. doi: 10.1111/jcmm.13516. Epub 2018 Feb 1.

Mirshafiee V, Sun B, Chang CH, Liao YP, Jiang W, Jiang J, Liu X, Wang X, Xia T, Nel AE. Toxicological Profiling of Metal Oxide Nanoparticles in Liver Context Reveals Pyroptosis in Kupffer Cells and Macrophages versus Apoptosis in Hepatocytes. ACS Nano. 2018 Apr 24. doi: 10.1021/acsnano.8b01086. Epub 2018 Mar 19.

Park K, Kuo Y, Shvadchak V, Ingargiola A, Dai X, Hsiung L, Kim W, Zhou H, Zou P, Levine AJ, Li J, Weiss S. Membrane insertion of-and membrane potential sensing by-semiconductor voltage nanosensors: Feasibility demonstration. Sci Adv. 2018 Jan 12;4(1):e1601453. doi: 10.1126/sciadv.1601453. eCollection 2018 Jan.

Sereti KI, Nguyen NB, Kamran P, Zhao P, Ranjbarvaziri S, Park S, Sabri S, Engel JL, Sung K, Kulkarni RP, Ding Y, Hsiai TK, Plath K, Ernst J, Sahoo D, Mikkola HKA, Iruela-Arispe ML, Ardehali R. Analysis of cardiomyocyte clonal expansion during mouse heart development and injury. Nature Communications. 2018 Feb 21. doi: 10.1038/s41467-018-02891-z.

Smith RC, Lopez IA. NCBE cotransporter unaffected in mouse retina lacking related NBCn1 protein. The UCLA Undergraduate Science Journal. 2018 31:9-13.

Wang H, Rivenson Y, Jin Y, Wei Z, Gao R, Gunaydin H, Bentolila L, Ozcan A. Deep learning achieves super-resolution in fluorescence microscopy. bioRxiv. 2018 Apr 27. doi: [Epub ahead of print]

Publications 2015

Ferando I, Mody I. In vitro gamma oscillations following partial and complete ablation of δ subunit-containing GABAA receptors from parvalbumin interneurons. Neuropharmacology. 2015 Jan;88:91-8. doi: 10.1016/j.neuropharm.2014.09.010. Epub 2014 Sep 28. PMID:25261782

Ishijima M, Hirota M, Park W, Honda MJ, Tsukimura N, Isokawa K, Ishigami T, Ogawa T. Osteogenic cell sheets reinforced with photofunctionalized micro-thin titanium. J Biomater Appl. 2015 Jan 19. pii: 0885328214567693. [Epub ahead of print] PMID: 25604095

Liclican EL, Walser TC, Hazra S, Krysan K, Park SJ, Pagano PC, Gardner BK, Larsen JE, Minna JD, Dubinett SM. Loss of miR125a expression in a model of K-ras-dependent pulmonary premalignancy. Cancer Prev Res (Phila). 2014 Aug;7(8):845-55. doi: 10.1158/1940-6207.CAPR-14-0063. Epub 2014 Jun 9. PMID:  24913817

Simerman AA, Hill DL, Grogan TR, Elashoff D, Clarke NJ, Goldstein EH, Manrriquez AN, Chazenbalk GD, Dumesic DA. Intrafollicular cortisol levels inversely correlate with cumulus cell lipid content as a possible energy source during oocyte meiotic resumption in women undergoing ovarian stimulation for in vitro fertilization. Fertil Steril. 2015 Jan;103(1):249-57. doi: 10.1016/j.fertnstert.2014.09.034. Epub 2014 Oct 24. PMID: 25439840

Sun B, Wang X, Ji Z, Wang M, Liao YP, Chang CH, Li R, Zhang H, Nel AE, Xia T. NADPH Oxidase-Dependent NLRP3 Inflammasome Activation and its Important Role in Lung Fibrosis by Multiwalled Carbon Nanotubes.  Small. 2015 Jan 12. doi: 10.1002/smll.201402859. [Epub ahead of print] PMID: 25581126

Publications 2014

Aijian AP, Garrell RL. Digital Microfluidics for Automated Hanging Drop Cell Spheroid Culture. J Lab Autom. 2014 Dec 15. pii: 2211068214562002. [Epub ahead of print] PMID: 25510471

Boado RJ, Lu JZ, Hui EK, Pardridge WM.Mol Pharm. Insulin receptor antibody sulfamidase fusion protein penetrates the primate blood-brain barrier and reduces glycosoaminoglycans in Sanfilippo type A cells. Mol Pharm. 2014 Aug 4;11(8):2928-34. doi: 1021/mp500258p. Epub 2014 Jun 26. PMID: 24949884

Comas-Garcia M, Garmann RF, Singaram SW, Ben-Shaul A, Knobler CM, Gelbart WM. Characterization of viral capsid protein self-assembly around short single-stranded RNA. J Phys Chem B  2014, 118, 7510?7519 . Epub  Jun 30. PMID: 24933579

Cui Y, Ostlund SB, James AS, Park CS, Ge W, Roberts KW, Mittal N, Murphy NP, Cepeda C, Kieffer BL, Levine MS, Jentsch JD, Walwyn WM, Sun YE, Evans  CJ, Maidment NT, Yang XW.  Targeted expression of ?-opioid receptors in a subset of striatal direct-pathway neurons restores opiate reward. Nat Neurosci.2014 Feb;17(2):254-61. doi: 10.1038/nn.3622. Epub 2014 Jan 12. PMID:

Drew BG, Ribas V, Le JA, Henstridge DC, Phun J, Zhou Z, Soleymani T, Daraei P, Sitz D, Vergnes L, Wanagat J, Reue K, Febbraio MA, Hevener AL. HSP72 is a mitochondrial stress sensor critical for Parkin action, oxidative metabolism, and insulin sensitivity in skeletal muscle. Diabetes. 2014 May;63(5):1488-505. doi: 10.2337/db13-0665. Epub 2013 Dec 30. PMID:24379352

Duran I, Nevarez L, Sarukhanov A, Wu S, Lee K, Krejci P, Weis M, Eyre D, Krakow D, Cohn DH. HSP47 and FKBP65 cooperate in the synthesis of type I procollagen. Hum Mol Genet. 2014 Dec 15. pii: ddu608. [Epub ahead of print] PMID: 25510505 

Ferrari R, Gou D, Jawdekar G, Johnson SA, Nava M, Su T, Yousef AF, Zemke NR, Pellegrini M, Kurdistani SK, Berk AJ. Adenovirus small E1A employs the lysine acetylases p300/CBP and tumor suppressor Rb to repress select host genes and promote productive virus infection. Cell Host Microbe. 2014 Nov 12;16(5):663-76. doi: 10.1016/j.chom.2014.10.004. Epub 2014 Nov 12. PMID: 25525796 

Gebremariam T, Liu M, Luo G, Bruno V, Phan QT, Waring AJ, Edwards JE Jr, Filler SG, Yeaman MR, Ibrahim AS. CotH3 mediates fungal invasion of host cells during mucormycosis.J Clin Invest. 2014 Jan 2;124(1):237-50. doi: 10.1172/JCI71349. Epub 2013 Dec 20. PMID: 24355926

Jumabay M, Abdmaulen R, Ly A, Cubberly MR, Shahmirian LJ, Heydarkhan-Hagvall S, Dumesic DA, Yao Y, Boström KI.Pluripotent stem cells derived from mouse and human white mature adipocytes. Stem Cells Transl Med. 2014 Feb;3(2):161-71. doi: 10.5966/sctm.2013-0107. Epub 2014 Jan 6. PMID: 24396033

Khachatoorian R, Ganapathy E, Ahmadieh Y, Wheatley N, Sundberg C, Jung CL,Arumugaswami V, Raychaudhuri S, Dasgupta A, French SW. The NS5A-binding heat shock proteins HSC70 and HSP70 play distinct roles in the hepatitis C viral life cycle.Virology. 2014 Apr;454-455:118-27. doi: 10.1016/j.virol.2014.02.016. Epub 2014 Feb 28. PMID:24725938

Kisalu NK, Langousis G, Bentolila LA, Ralston KS, Hill KL. Mouse infection and pathogenesis by Trypanosoma brucei motility mutants. Cell Microbiol. 2014 Jun;16(6):912-24. doi: 10.1111/cmi.12244. Epub 2014 Jan 8. PMID: 24286532

Kittur H, Weaver W, Di Carlo D. Well-plate mechanical confinement platform for studies of mechanical mutagenesis. Biomed Microdevices. 2014 Jun;16(3):439-47. doi: 10.1007/s10544-014-9846-4. PMID: 24619125

Lei NY, Jabaji Z, Wang J, Joshi VS, Brinkley GJ, Khalil H, Wang F, Jaroszewicz A, Pellegrini M, Li L, Lewis M, Stelzner M, Dunn JC, Martín MG.  Intestinal subepithelial myofibroblasts support the growth of intestinal epithelial stem cells.PLoS One. 2014 Jan 6;9(1):e84651. doi:10.1371/journal.pone.0084651.PMID:24400106

Liba A, Wanagat J.  Single Cell Multiplex Protein Measurements through Rare Earth Element Immunolabeling, Laser Capture Microdissection and Inductively Coupled Mass Spectrometry. J Cytol Histol 2014 5:290. doi: 10.4172/2157-7099.1000290

Li R, Ji Z, Qin H, Kang X, Sun B, Wang M, Chang CH, Wang X, Zhang H, Zou H, Nel AE, Xia T. Interference in autophagosome fusion by rare earth nanoparticles disrupts autophagic flux and regulation of an interleukin-1? producing inflammasome. ACS Nano. 2014 Oct 28;8(10):10280-92. doi: 10.1021/nn505002w. Epub 2014 Oct 1.PMID: 25251502

Li R, Ji Z, Chang CH, Dunphy DR, Cai X, Meng H, Zhang H, Sun B, Wang X, Dong J, Lin S, Wang M, Liao YP, Brinker CJ, Nel A, Xia T. Surface interactions with compartmentalized cellular phosphates explain rare earth oxide nanoparticle hazard and provide opportunities for safer design. ACS Nano. 2014 Feb 25;8(2):1771-83. doi: 10.1021/nn406166n. Epub 2014 Jan 26.

Lugassy C, Zadran S, Bentolila LA, Wadehra M, Prakash R, Carmichael ST, Kleinman HK, Péault B, Larue L, Barnhill RL. Angiotropism, pericytic mimicry and extravascular migratory metastasis in melanoma: an alternative to intravascular cancer dissemination. Cancer Microenviron. 2014 Dec;7(3):139-52. doi: 10.1007/s12307-014-0156-4. Epub 2014 Oct 12. PMID: 25304454

Ma QL, Zuo X, Yang F, Ubeda OJ, Gant DJ, Alaverdyan M, Kiosea NC, Nazari S, Chen PP, Nothias F, Chan P, Teng E, Frautschy SA, Cole GM.  Loss of MAP function leads to hippocampal synapse loss and deficits in the Morris Water Maze with aging.J Neurosci. 2014 May 21;34(21):7124-36. PMID: 24849348

Ooi AT, Gower AC, Zhang KX, Vick JL, Hong L, Nagao B, Wallace WD, Elashoff DA,Walser TC, Dubinett SM, Pellegrini M, Lenburg ME, Spira A, Gomperts BN. Molecular profiling of premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis. Cancer Prev Res (Phila). 2014 May;7(5):487-95. doi: 10.1158/1940-6207.CAPR-13-0372. Epub 2014 Mar 11. PMID: 24618292

Pang S, Shen J, Liu Y, Chen F, Zheng Z, James AW, Hsu CY, Zhang H, Lee KS, Wang C, Li C, Chen X, Jia H, Zhang X, Soo C, Ting K. Proliferation and osteogenic differentiation of mesenchymal stem cells induced by a short isoform of NELL-1. Stem Cells. 2014 Nov 6. doi: 10.1002/stem.1884. [Epub ahead of print] PMID:25376942

Spence RD, Kurth F, Itoh N, Mongerson CR, Wailes SH, Peng MS, MacKenzie-Graham AJ. Bringing CLARITY to gray matter atrophy. Neuroimage. 2014 Nov 1;101:625-32. doi: 10.1016/j.neuroimage.2014.07.017. Epub 2014 Jul 16.  PMID: 25038439

Stoecklein D, Wu CY, Owsley K, Xie Y, Di Carlo D, Ganapathysubramanian B. Micropillar sequence designs for fundamental inertial flow transformations. Lab Chip. 2014 Nov 7;14(21):4197-204. doi: 10.1039/c4lc00653d. PMID: 25268387

Tseng P, Di Carlo D. Substrates with patterned extracellular matrix and subcellular stiffness gradients reveal local biomechanical responses. Adv Mater. 2014 Feb 26;26(8):1242-7. doi: 10.1002/adma.201304607. Epub 2013 Dec 9.PMID: 24323894

Tseng P, Lin J, Owsley K, Kong J, Kunze A, Murray C, Di Carlo D. Flexible and Stretchable Micromagnet Arrays for Tunable Biointerfacing. Adv Mater. 2014 Dec 23. doi: 10.1002/adma.201404849. [Epub ahead of print] PMID:25537971

Tseng P, Pushkarsky I, Di Carlo D. Metallization and biopatterning on ultra-flexible substrates via dextran sacrificial layers. PLoS One. 2014 Aug 25;9(8):e106091. doi: 10.1371/journal.pone.0106091. eCollection 2014. PMID: 25153326

Ubil E, Duan J, Pillai IC, Rosa-Garrido M, Wu Y, Bargiacchi F, Lu Y, Stanbouly S, Huang J, Rojas M, Vondriska TM, Stefani E, Deb A. Mesenchymal-endothelial transition contributes to cardiac neovascularization. Nature. 2014 Oct 30; 514(7524):585-90. doi: 10.1038/nature13839. Epub 2014 Oct 15. PMID:25317562

Zhang P, Verity MA, Reue K. Lipin-1 Regulates Autophagy Clearance and Intersects with Statin Drug Effects in Skeletal Muscle.Cell Metab. 2014 Jun 11. pii: S1550-4131(14)00211-3.  doi: 10.1016/j.cmet.2014.05.003. [Epub ahead of print] PMID:    24930972

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