Improving pharmacogenetic analyses of tumor cells
Dr. Niccola Funel from the Department of Surgery, Unit of Experimental Surgical Pathology, University of Pisa, studies the Pancreatic Ductal Adenocarcinoma (PDAC). A key focus of his research is identifying new techniques to tailor adequate treatments:
"PDAC is a very aggressive pancreatic tumor, and overall survival of PDAC patients is very poor. The PDAC tissue exhibits an intense desmoplastic reaction which can mask the true tumor expression. However, the target of drugs is referred to the epithelial cells and not the stromal cells (desmoplastic reaction). We have demonstrated that laser microdissection improves pharmacogenetic analyses on PDAC, as it helps the pathologist to harvest tumor cells only and thus establish their real genetic expression. We compared LMD tissues versus non LMD tissues and found a significant difference in terms of mRNA and miRNA expression. Finally, working with laser microdissection, we found a progressive upgrade of methodological approach, increasing the efficiency of molecular tests."
Understanding asymmetric stem cell division
Prof. Monica Gotta from the Department of Genetic Medicine and Development at the University of Geneva uses the LMD for the study of asymmetric cell division, which allows the generation of cell diversity during development and stem cell renewal:
"Establishment of cell polarity and positioning of the mitotic spindle are essential prerequisites for asymmetric cell division. While many players in these processes have been identified, the big challenge is now to understand how these regulate each other and how they regulate polarity and spindle positioning.
My lab studies these processes using the C. elegans embryo as a model system. This is a great system for studying asymmetric cell division as the one cell embryo is polarized and the first division is asymmetric. Furthermore we can combine genetics, live cell imaging, biochemistry and genomics/proteomics.
One limitation of the embryo is the egg shell, which does not allow the use of inhibitors. To overcome this problem we use the LMD. It allows us to permeabilize the tough and impermeable eggshell by producing small holes that allow penetration of drugs dissolved in the embryo mounting medium and therefore inhibition of a pathway or protein of interest with high spatial and temporal resolution.
We also use the LMD for the mechanical destruction of other structures such as centrosomes and microtubules, which allows measurements of movement and velocities in wild type and mutant backgrounds. The system has also been used to ablate specific cells during development to study cell function and/or lineage.”
The Morbus Parkinson puzzle
Dr. Falk Schlaudraff researched Morbus Parkinson at the molecular level as a doctoral candidate under the supervision of Prof. Dr. Birgit Liss in the Molecular Neurophysiology team at the Institute of Applied Physiology, University of Ulm:
"There are several theories on how the disease originates. M. Parkinson can be compared to a puzzle. We have already found many of the pieces and can put some of them together, but we don’t know what the whole picture looks like. We wanted to selectively view the midbrain dopaminergic neurons that are involved in the pathogenic process and used laser microdissection for validated comparison at the single-cell level. This technique makes it possible to accurately cut individual dopaminergic neurons out of complex tissue, without contact or contamination, and analyze the gene expression in individual cells.
The most prevalent type of tissue in the brain is supporting tissue: without laser microdissection, it would be almost impossible to clearly characterize the relatively rare nerve cells on a molecular level; they would not be distinguishable from background noise. The analysis of single cells frequently
leads to different results from those obtained from a complete tissue examination. Studies have shown that the expression of certain microRNAs is changed in the tissue of M. Parkinson patients. We were able to confirm the results for the whole tissue. However, we also examined microdissected cells in parallel. Here we found that the investigated microRNA expression is not changed on a single cell level. This tissue artifact was detected with the aid of laser microdissection."
Molecular network in Arabidopsis
The research of Prof. Lucia Colombo and Raffaella Battaglia, Ph.D. from the Department of Biology at the University of Milan aims at understanding the molecular mechanisms that control plant reproduction. The lab uses Arabidopsis thaliana as model species. Molecular information obtained from this small model species has often been fundamental to highlighting molecular networks in agronomically important species like rice:
"We want to identify and functionally characterize those genes which play a role during female organ formation and fertilization in Arabidopsis thaliana. Our lab has strongly contributed to the comprehension of the molecular mechanisms at the base of ovule differentiation. We participated in the identification and functional characterization of those genes, mainly encoding for transcription factors, which give important signals to start the ovule differentiation process.
MADS-box transcription factors represent an important group of key regulators which act as molecular switches to activate molecular cascades leading to mature organ formation. Despite the fact that the importance of MADS-box proteins for such functions as organ identity determination and flowering time control is well established, few direct target genes of MADS-box transcription factors have been identified in plants until now. Using laser microdissection, we have recently identified the first gene regulated by MADS-box transcription factors involved in ovule differentiation.
We know which genes are switched off as a consequence of the lack of activity of MADS-box factors. We have identified and functionally described the VERDANDI (VDD) gene as a direct target of ovule identity MADS-box factors but also playing a fundamental role in female gametophyte differentiation. The possibility to combine single cell analysis with genome-wide approaches is giving a powerful impulse to developmental biology."
Fig. 4: Laser microdissection helps to identify and functionally characterize genes which play a role during female organ formation and fertilization in Arabidopsis thaliana.
The mitochondrial hypothesis of aging
Why do we grow old? Scientists have been looking for an answer to this question for many years – particularly against the background of the increase in neurodegenerative diseases among older people such as Morbus Parkinson. PD Dr. med. Andreas Bender from the Neurological Hospital of the University of Munich-Großhadern is researching the mitochondrial hypothesis of aging, which regards a vicious molecular circle of oxidative damage and mtDNA mutations as being a cause of neuronal functional disorders:
"Our aim is to investigate at single-cell level why some cell types are more susceptible to neurodegenerative diseases like Morbus Parkinson than others. After extracting these cells from human post mortem brain tissue by laser microdissection we subject them to molecular-biological examination. In particular, we are looking for damage to mitochondrial DNA (mtDNA). Mitochondria have not been thoroughly researched with single cell analysis so far, although evidence is growing that they could play a major role in neurodegenerative diseases and in the aging process.
What surprised us was that there were a lot of mtDNA mutations in 60- to 70-year-old control patients as well – although distinctly fewer than in the Parkinson group. In a second step we therefore examined control samples of people of all ages, from a few months to a hundred years old. We found that the mtDNA deletions increase with age. We are born with no or extremely few deletions and at some stage in our life the critical threshold of 50 to 60 % of mutations is reached.
Laser microdissection plays an extremely important role, as the precise dissection of individual cells ensures that we really examine the cells that interest us. Before the age of laser microdissection, most examinations were done on homogenates. These contained different types of cells, so that the molecular connections we were researching sometimes disappeared in a great background noise. If a disease only affects one particular cell type, as in the case of Parkinson’s, we only obtain meaningful results when we are able to analyze homogeneous cell material."
Current publications using laser microdissection
Links to current papers in the major application fields for laser microdissection you find in the our publication list:
Click here to go to 'Laser Microdissection List of Publications'
How is Microscopy Used in Spatial Biology? A Microscopy Guide
Different spatial biology methods in microscopy, such as multiplex imaging, are helping to better…May 10, 2023Read article
RNA Quality after Different Tissue Sample Preparation
The influence of sample preparation and ultraviolet (UV) laser microdissection (UV LMD) on the…Sep 23, 2022Read article
Dissecting Proteomic Heterogeneity of the Tumor Microenvironment
This lecture will highlight cutting edge applications in applying laser microdissection and…Jun 15, 2021Read article